PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031446
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 295aa    MW: 34110.1 Da    PI: 6.6466
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031446genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001155179123
                  EEETTTTEEESSHHHHHHHHHH..T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                  + C  C+k ++  +++++H+++  H
  Lus10031446 155 FYCDLCKKQYKLAMEFEVHLSSydH 179
                  78*****************987555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004436.3E-1858103IPR000467G-patch domain
PROSITE profilePS5017416.92160105IPR000467G-patch domain
PfamPF015851.0E-1561101IPR000467G-patch domain
PROSITE patternPS000280157179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDHRRYNSDH ERDKRRLDAD QESVIEDLGQ EFCLPINFRP TENVDLENVE QASLETKLTS  60
SNVGFRLLQK MGWKGKGLGK DEQGIVEPIK SGIRDAKLGL GKQEEDDYFT AEENIQRKKL  120
DIEVEETEEN AKKREVLAER DKKIQTEVQE IRKVFYCDLC KKQYKLAMEF EVHLSSYDHN  180
HRKRFKEMRE MHGSSSRDDR QKRELQRQER EMAKFAQMAD AHKQQQQLEL QQEESGSAAK  240
TVTSSLGDQD QRKTLKFGFS SKSSSSKKVT LTASAAKRPK VVLASVFKDD SEEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874789.11e-158PREDICTED: G patch domain-containing protein 8
RefseqXP_015874788.11e-158PREDICTED: G patch domain-containing protein 8
RefseqXP_015874787.11e-158PREDICTED: G patch domain-containing protein 8
TrEMBLA0A061F5351e-157A0A061F535_THECC; D111/G-patch domain-containing protein
STRINGPOPTR_0005s00450.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428